Linkage Mapping and Comparative Genomics of Red Drum (Sciaenops ocellatus) Using Next-Generation Sequencing
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چکیده
منابع مشابه
Linkage Mapping and Comparative Genomics of Red Drum (Sciaenops ocellatus) Using Next-Generation Sequencing
Developments in next-generation sequencing allow genotyping of thousands of genetic markers across hundreds of individuals in a cost-effective manner. Because of this, it is now possible to rapidly produce dense genetic linkage maps for nonmodel species. Here, we report a dense genetic linkage map for red drum, a marine fish species of considerable economic importance in the southeastern United...
متن کاملA genetic linkage map of red drum, Sciaenops ocellatus.
Second-generation, sex-specific genetic linkage maps were generated for the economically important estuarine-dependent marine fish Sciaenops ocellatus (red drum). The maps were based on F(1) progeny from each of two single-pair mating families. A total of 237 nuclear-encoded microsatellite markers were mapped to 25 linkage groups. The female map contained 226 markers, with a total length of 127...
متن کاملLinkage Mapping and Comparative Genomics Using Next-Generation RAD Sequencing of a Non-Model Organism
Restriction-site associated DNA (RAD) sequencing is a powerful new method for targeted sequencing across the genomes of many individuals. This approach has broad potential for genetic analysis of non-model organisms including genotype-phenotype association mapping, phylogeography, population genetics and scaffolding genome assemblies through linkage mapping. We constructed a RAD library using g...
متن کاملOntogeny of critical swimming speed of wild-caught and laboratory-reared red drum Sciaenops ocellatus larvae
Critical swimming speed (Ucrit) provides a useful estimate of maximum swimming performance for fish larvae that can be used to assess transport and migratory potential. We measured Ucrit of red drum Sciaenops ocellatus larvae through its ontogeny and compared the swimming performance of laboratory-reared larvae to that of wild-caught individuals. Ucrit increased with ontogeny (size), even thoug...
متن کاملCondition of larval and juvenile red drum (Sciaenops ocellatus ) from estuarine nursery habitats
RNA:DNA ratios of larval and juvenile red drum (Sciaenops ocellatus) collected from nursery habitats in the Aransas Estuary, Texas, in 1994 were quantified using a highly sensitive ethidium-bromide fluorometric technique. RNA:DNA ratios of wild red drum were evaluated by comparing individual values to a linear regression model derived for starved laboratoryreared red drum. Wild red drum were in...
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ژورنال
عنوان ژورنال: G3 Genes|Genomes|Genetics
سال: 2017
ISSN: 2160-1836
DOI: 10.1534/g3.116.036350